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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
Database
  • Lisa Harper, United States Department of Agriculture
  • Jacqueline Campbell, Iowa State University
  • Ethalinda K. S. Cannon, Iowa State University
  • Monica Poelchau, United States Department of Agriculture
  • Carson Andorf, United States Department of Agriculture
  • Clayton Birkett, United States Department of Agriculture
  • Steve Cannon, United States Department of Agriculture
  • David Grant, United States Department of Agriculture
  • Zhi-Liang Hu, Iowa State University
  • Gerard Lazo, United State Deparment of Agriculture
  • Rex Nelson, United States Department of Agriculture
  • Carissa Park, Iowa State University
  • James Reecy, Iowa State University
  • Taner Z. Sen, United States Department of Agriculture
  • Doreen Ware, United States Department of Agriculture
  • Margaret Woodhouse, Iowa State University
  • et al., et al.
Document Type
Article
Publication Version
Published Version
Publication Date
1-1-2018
DOI
10.1093/database/bay088
Abstract

The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require data management plans for publicly funded research. Furthermore, the value of data increases exponentially when they are properly stored, described, integrated and shared, so that they can be easily utilized in future analyses. AgBioData (https://www.agbiodata.org) is a consortium of people working at agricultural biological databases, data archives and knowledgbases who strive to identify common issues in database development, curation and management, with the goal of creating database products that are more Findable, Accessible, Interoperable and Reusable. We strive to promote authentic, detailed, accurate and explicit communication between all parties involved in scientific data. As a step toward this goal, we present the current state of biocuration, ontologies, metadata and persistence, database platforms, programmatic (machine) access to data, communication and sustainability with regard to data curation. Each section describes challenges and opportunities for these topics, along with recommendations and best practices.

Comments

This article is published as Harper,L., Campbell,J., Cannon,E.K.S. et al. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database (2018) Vol. 2018: article ID bay088; doi: 10.1093/database/bay088.

Rights
Works produced by employees of the U.S. Government as part of their official duties are not copyrighted within the U.S. The content of this document is not copyrighted.
Language
en
File Format
application/pdf
Citation Information
Lisa Harper, Jacqueline Campbell, Ethalinda K. S. Cannon, Monica Poelchau, et al.. "AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture" Database Vol. 2018 (2018) p. bay088
Available at: http://works.bepress.com/james_reecy/127/