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Crystallization and preliminary X-ray diffraction analysis of the barley yellow dwarf virus cap-independent translation element
Acta Crystallographica Section F: Structural Biology and Crystallization Communications
  • Jelena Jeremic Kraft, Iowa State University
  • Julie A. Hoy, Iowa State University
  • W. Allen Miller, Iowa State University
Document Type
Article
Publication Version
Published Version
Publication Date
1-1-2011
DOI
10.1107/S1744309111007196
Abstract

Barley yellow dwarf virus (BYDV) RNA lacks a 5′ m7GTP cap, yet it is translated efficiently because it contains a 105-base BYDV-like cap-independent translation element (BTE) in the 3′ untranslated region (UTR). To understand how the BTE outcompetes the host mRNA for protein-synthesis machinery, its three-dimensional structure is being determined at high resolution. The purification using transcription from DNA containing 2′-O-methyl nucleotides and preliminary crystallographic analyses of the BTE RNA are presented here. After varying the BTE sequence and crystallization-condition optimization, crystals were obtained that diffracted to below 5 Å resolution, with a complete data set being collected to 6.9 Å resolution. This crystal form indexes with an Rmerge of 0.094 in the monoclinic space group C2, with unit-cell parameters a = 316.6, b = 54.2, c = 114.5 Å, α = γ = 90, β = 105.1°.

Comments

This article is from Acta Crystallographica Section F: Structural Biology and Crystallization Communications 67 (2011): 561, doi: 10.1107/S1744309111007196. Posted with permission.

Rights
This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright Owner
International Union of Crystallography
Language
en
File Format
application/pdf
Citation Information
Jelena Jeremic Kraft, Julie A. Hoy and W. Allen Miller. "Crystallization and preliminary X-ray diffraction analysis of the barley yellow dwarf virus cap-independent translation element" Acta Crystallographica Section F: Structural Biology and Crystallization Communications Vol. 67 Iss. 5 (2011) p. 561 - 564
Available at: http://works.bepress.com/wallen_miller/17/