Skip to main content
Article
Deep Phylogenomics of a Tandem-repeat Galectin Regulating Appendicular Skeletal Pattern Formation
BMC Evolutionary Biology
  • Ramray Bhat, University of California, Irvine
  • Mahul Chakraborty, University of California, Irvine
  • Tilmann Glimm, Western Washington University
  • Thomas A. Stewart, Yale University
  • Stuart (Stuart A.) Newman, New York Medical College
Document Type
Article
Publication Date
1-1-2016
Keywords
  • Galectin-8,
  • Limb skeleton,
  • Pattern formation,
  • Mathematical modeling,
  • Homology
Disciplines
Abstract

Background: A multiscale network of two galectins Galectin-1 (Gal-1) and Galectin-8 (Gal-8) patterns the avian limb skeleton. Among vertebrates with paired appendages, chondrichthyan fins typically have one or more cartilage plates and many repeating parallel endoskeletal elements, actinopterygian fins have more varied patterns of nodules, bars and plates, while tetrapod limbs exhibit tandem arrays of few, proximodistally increasing numbers of elements. We applied a comparative genomic and protein evolution approach to understand the origin of the galectin patterning network. Having previously observed a phylogenetic constraint on Gal-1 structure across vertebrates, we asked whether evolutionary changes of Gal-8 could have critically contributed to the origin of the tetrapod pattern.

Results: Translocations, duplications, and losses of Gal-8 genes in Actinopterygii established them in different genomic locations from those that the Sarcopterygii (including the tetrapods) share with chondrichthyans. The sarcopterygian Gal-8 genes acquired a potentially regulatory non-coding motif and underwent purifying selection. The actinopterygian Gal-8 genes, in contrast, did not acquire the non-coding motif and underwent positive selection.

Conclusion: These observations interpreted through the lens of a reaction-diffusion-adhesion model based on avian experimental findings can account for the distinct endoskeletal patterns of cartilaginous, ray-finned, and lobe-finned fishes, and the stereotypical limb skeletons of tetrapods.

Required Publisher's Statement

Link to journal article: http://link.springer.com/article/10.1186/s12862-016-0729-6

DOI: 10.1186/s12862-016-0729-6

Comments

Link to journal article: http://link.springer.com/article/10.1186/s12862-016-0729-6

DOI: 10.1186/s12862-016-0729-6

Subjects - Topical (LCSH)
Extremities (Anatomy)--Phylogeny; Homology (Biology)--Mathematical models; Beta-galactosidase; Reaction-diffusion equations
Genre/Form
articles
Type
Text
Rights
Copying of this document in whole or in part is allowable only for scholarly purposes. It is understood, however, that any copying or publication of this document for commercial purposes, or for financial gain, shall not be allowed without the author’s written permission.
Creative Commons License
Creative Commons Attribution 4.0 International
Language
English
Format
application/pdf
Citation Information
Bhat, R., Chakraborty, M., Glimm, T. et al. BMC Evol Biol (2016) 16: 162. doi:10.1186/s12862-016-0729-6