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Unpublished Paper
High-density SNP Genotyping Analysis of Broiler Breeding Lines
Animal Industry Report
  • Abebe T. Hassen, Iowa State University
  • Jack C.M. Dekkers, Iowa State University
  • Susan J. Lamont, Iowa State University
  • Rohan L. Fernando, Iowa State University
  • Santiago Avendano, Aviagen Ltd.
  • John Ralph, Aviagen Ltd.
  • Jim McKay, EW Group GmbH
  • William G. Hill, University of Edinburgh
Extension Number
ASL R2219
Publication Date
Summary and Implications
The purpose of the genomic initiative project that is described herein is to use high-density single nucleotide polymorphism (SNP) marker genotypes on sires from commercial broiler lines and mean performance of their progeny to identify regions of the genome that are associated with economic traits. This report addresses some of the methodological aspects considered during analysis and interpretation of the data. Considering the large amount of phenotypic and SNP data, the data were analyzed separately for each line using mixed models procedures. Results were then pooled across lines to determine overall significance. Preliminary results showed important association of several genomic regions with mean progeny performance. But, the degree of significance was influenced by the size of heritability value used. Results from this project will be an important step towards implementation of marker-assisted selection in commercial broiler breeding programs.
Copyright Holder
Iowa State University
Citation Information
Abebe T. Hassen, Jack C.M. Dekkers, Susan J. Lamont, Rohan L. Fernando, et al.. "High-density SNP Genotyping Analysis of Broiler Breeding Lines" (2007)
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