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E. coli elongation factor Tu bound to a GTP analogue displays an open conformation equivalent to the GDP-bound form
Nucleic Acids Research
  • Jesper S. Johansen, University of Aarhus
  • Darius Kavaliauskas, University of Aarhus
  • Shawn H. Pfeil, West Chester University of Pennsylvania
  • Mickael Blaise, University of Aarhus
  • Barry C. Cooperman, University of Pennsylvania
  • Yale E. Goldman, University of Pennsylvania
  • Søren S. Thirup, University of Aarhus
  • Charlotte R. Knudsen, University of Aarhus
Document Type
Article
Publication Date
8-11-2018
Abstract

According to the traditional view, GTPases act as molecular switches, which cycle between distinct ‘on’ and ‘off’ conformations bound to GTP and GDP, respectively. Translation elongation factor EF-Tu is a GTPase essential for prokaryotic protein synthesis. In its GTP-bound form, EF-Tu delivers aminoacylated tRNAs to the ribosome as a ternary complex. GTP hydrolysis is thought to cause the release of EF-Tu from aminoacyl-tRNA and the ribosome due to a dramatic conformational change following Pi release. Here, the crystal structure of Escherichia coli EF-Tu in complex with a non-hydrolysable GTP analogue (GDPNP) has been determined. Remarkably, the overall conformation of EF-Tu·GDPNP displays the classical, open GDP-bound conformation. This is in accordance with an emerging view that the identity of the bound guanine nucleotide is not ‘locking’ the GTPase in a fixed conformation. Using a single molecule approach, the conformational dynamics of various ligand-bound forms of EF-Tu were probed in solution by fluorescence resonance energy transfer. The results suggest that EF-Tu, free in solution, may sample a wider set of conformations than the structurally well-defined GTP- and GDP-forms known from previous X-ray crystallographic studies. Only upon binding, as a ternary complex, to the mRNA programmed ribosome, is the well-known, closed GTP-bound conformation, observed.

Publisher
Oxford University Press
DOI
10.1093/nar/gky697
Citation Information
Jesper S. Johansen, Darius Kavaliauskas, Shawn H. Pfeil, Mickael Blaise, et al.. "E. coli elongation factor Tu bound to a GTP analogue displays an open conformation equivalent to the GDP-bound form" Nucleic Acids Research Vol. 46 Iss. 16 (2018) p. 8641 - 8650 ISSN: 0305-1048
Available at: http://works.bepress.com/shawn-pfeill/1/