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Multiple States of Nitrile Hydratase from Rhodococcus equi TG328-2: Structural and Mechanistic Insights from Electron Paramagnetic Resonance and Density Functional Theory Studies
Biochemistry
  • Natalia Stein, University of Wisconsin - Milwaukee
  • Natalie Gumataotao, Loyola University Chicago
  • Natalia Hajnas, Loyola University Chicago
  • Rui Wu, Loyola University Chicago
  • Karunagala Pathiranage Wasantha Lankathilaka, Marquette University
  • Uwe Bornscheuer, Greifswald University
  • Dali Liu, Loyola University Chicago
  • Adam T. Fiedler, Marquette University
  • Richard C. Holz, Marquette University
  • Brian Bennett, Marquette University
Document Type
Article
Language
eng
Publication Date
1-1-2017
Publisher
American Chemical Society
Disciplines
Abstract

Iron-type nitrile hydratases (NHases) contain an Fe(III) ion coordinated in a characteristic “claw setting” by an axial cysteine thiolate, two equatorial peptide nitrogens, the sulfur atoms of equatorial cysteine-sulfenic and cysteine-sulfinic acids, and an axial water/hydroxyl moiety. The cysteine-sulfenic acid is susceptible to oxidation, and the enzyme is traditionally prepared using butyric acid as an oxidative protectant. The as-prepared enzyme exhibits a complex electron paramagnetic resonance (EPR) spectrum due to multiple low-spin (S = 1/2) Fe(III) species. Four distinct signals can be assigned to the resting active state, the active state bound to butyric acid, an oxidized Fe(III)–bis(sulfinic acid) form, and an oxidized complex with butyric acid. A combination of comparison with earlier work, development of methods to elicit individual signals, and design and application of a novel density functional theory method for reproducing g tensors to unprecedentedly high precision was used to assign the signals. These species account for the previously reported EPR spectra from Fe-NHases, including spectra observed upon addition of substrates. Completely new EPR signals were observed upon addition of inhibitory boronic acids, and the distinctive g1 features of these signals were replicated in the steady state with the slow substrate acetonitrile. This latter signal constitutes the first EPR signal from a catalytic intermediate of NHase and is assigned to a key intermediate in the proposed catalytic cycle. Earlier, apparently contradictory, electron nuclear double resonance reports are reconsidered in the context of this work.

Comments

Accepted version. Biochemistry, Vol. 56, No. 24 (2017): 3068-3077. DOI. © 2017 American Chemical Society. Used with permission.

Citation Information
Natalia Stein, Natalie Gumataotao, Natalia Hajnas, Rui Wu, et al.. "Multiple States of Nitrile Hydratase from Rhodococcus equi TG328-2: Structural and Mechanistic Insights from Electron Paramagnetic Resonance and Density Functional Theory Studies" Biochemistry (2017) ISSN: 0006-2960
Available at: http://works.bepress.com/richard_holz/112/