Skip to main content
Article
Nitrosative Guanine Deamination: Ab Initio Study of Deglycation of N-Protonated 5-Cyanoimino-4-oxomethylene-4,5-dihydroimidazoles
Chemical Research in Toxicology
  • Sundeep Rayat
  • Zhengyu Wu
  • Rainer Glaser, Missouri University of Science and Technology
Abstract

5-Cyanoimino-4-oxomethylene-4,5-dihydroimidazoles (1) (R at N1) have been discussed as possible intermediates in nitrosative guanine deamination, which are formed by dediazoniation and deprotonation of guaninediazonium ion. The parent system 1 (R=H) and its N1 derivatives 2 (R=Me) and 3 (R=MOM) are considered here. Protonation of 1-3, respectively, may occur either at the cyano-N to form cations 4 (R=H), 6 (R=Me), and 8 (R=MOM) or at the imino-N to form cations 5 (R=H), 7 (R=Me), and 9 (R=MOM), respectively. This protonation is the first step in the acid-catalyzed water addition to form 5-cyanoimino-imidazole-4-carboxylic acid, which then leads to oxanosine. There also exists the option of a substitution reaction by water at the R group of 6-9, and this dealkylation forms N-[4-(oxomethylene)-imidazol-5-yl]-carbodiimide (10) and N-[4-(oxomethylene)-imidazol-5-yl]cyanamide (11). In the case of DNA, the R group is a deoxyribose sugar, and attack by water leads to deglycation. To explore this reaction option, the SN1 and SN2 reactions of 6-9 with water were studied at the MP2/6-31G*//RHF/6-31G* and CCSD/6-31G*//RHF/6-31G* levels, with the inclusion of implicit solvation at the IPCM(MP2/6-31G*)//RHF/6-31G* level, and the electron density distributions of tautomers 1, 10, and 11 were analyzed. The low barriers determined for the MOM transfer show that the deglycation could occur at room temperature but that the process cannot compete with water addition.

Department(s)
Chemistry
Keywords and Phrases
  • 5 cyanoimino 4 oxomethylene 4,5 dihydroimidazole,
  • 5 cyanoiminoimidazole 4 carboxylic acid,
  • carboxylic acid derivative,
  • guanine,
  • imidazole derivative,
  • n [4 (oxomethylene)imidazol 5 yl]carbodiimide,
  • n [4 (oxomethylene)imidazol 5 yl]cyanamide,
  • unclassified drug,
  • ab initio calculation,
  • cross linking,
  • dealkylation,
  • deamination,
  • nitrosation,
  • proton transport,
  • reaction analysis,
  • synthesis,
  • thermodynamics,
  • Dealkylation,
  • Deamination,
  • Guanine,
  • Hydrolysis,
  • Imidazoles,
  • Imines,
  • Kinetics,
  • Models,
  • Chemical,
  • Models,
  • Molecular,
  • Molecular Conformation,
  • Molecular Structure,
  • Nitrosation,
  • Thermodynamics
Document Type
Article - Journal
Document Version
Citation
File Type
text
Language(s)
English
Rights
© 2004 American Chemical Society (ACS), All rights reserved.
Publication Date
8-1-2004
Publication Date
01 Aug 2004
Disciplines
Citation Information
Sundeep Rayat, Zhengyu Wu and Rainer Glaser. "Nitrosative Guanine Deamination: Ab Initio Study of Deglycation of N-Protonated 5-Cyanoimino-4-oxomethylene-4,5-dihydroimidazoles" Chemical Research in Toxicology Vol. 17 Iss. 9 (2004) p. 1157 - 1169 ISSN: 0893-228X; 1520-5010
Available at: http://works.bepress.com/rainer-glaser/94/