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SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids
Scientific Reports
  • Antonio AF Garcia
  • Marcelo Mollinari
  • Thiago G Marconi
  • Oliver R Serang
  • Renato R Silva
  • Maria LC Vieira
  • Renato Vicentini
  • Estela A Costa
  • Melina C Mancini
  • Melissa OS Garcia
  • Maria M Pastina
  • Rodrigo Gazaffi
  • Eliana RF Martins
  • Nair Dahmer
  • Danilo A Sforça
  • Claudio BC Silva
  • Peter C Bundock, Southern Cross University
  • Robert J Henry, Southern Cross University
  • Glaucia M Souza
  • Marie-Anne van Sluys
  • Marcos GA Landell
  • Monalisa S Carneiro
  • Michel AG Vincentz
  • Luciana R Pinto
  • Roland Vencovsky
  • Anete P Souza
Document Type
Article
Publication Date
1-1-2013
Peer Reviewed
Peer-Reviewed
Abstract
Many plant species of great economic value (e.g., potato, wheat, cotton, and sugarcane) are polyploids. Despite the essential roles of autopolyploid plants in human activities, our genetic understanding of these species is still poor. Recent progress in instrumentation and biochemical manipulation has led to the accumulation of an incredible amount of genomic data. In this study, we demonstrate for the first time a successful genetic analysis in a highly polyploid genome (sugarcane) by the quantitative analysis of single-nucleotide polymorphism (SNP) allelic dosage and the application of a new data analysis framework. This study provides a better understanding of autopolyploid genomic structure and is a sound basis for genetic studies. The proposed methods can be employed to analyse the genome of any autopolyploid and will permit the future development of high-quality genetic maps to assist in the assembly of reference genome sequences for polyploid species.
Disciplines
Citation Information

Garcia, AAF, Mollinari, M, Marconi, TG, Serang, OR, Silva, RR, Vieira, MLC, Vicentini, R, Costa, EA, Mancini, MC, Garcia, MOS, Pastina, MM, Gazaffi, R, Martins, ERF, Dahmer, N, Sforça, DA, Silva, CBC, Bundock, PC, Henry, RJ, Souza, GM, van Sluys, MA, Landell, MGA, Carneiro, MS, Vincentz, MAG, Pinto, LR, Vencovsky, R & Souza, AP 2013, 'SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids', Scientific Reports, vol. 3, art. 3399.

Article available on Open Access