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Article
PCR reaction parameter titration as an approach to develop shortened reaction times in a conventional thermal cycler
Journal of Rapid Methods & Automation in Microbiology (2000)
  • Lynne A. McLandsborough, University of Massachusetts - Amherst
  • W.K. Shaw
Abstract

A shortened PCR procedure was developed in a conventional thermal cycler. Overnight cultures of E. coli were used for PCR to amplify fragments of the uidA and slxII genes. A standard PCR program (30 cycles of 1 m denaturation at 94C, 1 m annealing at 54C or 60C, and 2.5 m elongation at 72C) required 3.5 h to complete and was able to detect a product from 1 × 103 PCR template cells in an agarose gel. The shortened PCR program (35 cycles of 17 s denaturation at 94C, 20 s annealing at 54C or 60C and 23 s elongation at 72C) required 1.5 h time and was able to detect PCR product from 5×10 PCR template cells. The results show that it is possible to shorten the time of each PCR cycle producing a more rapid method for the detection of E. coli while still using a conventional thermal cycler. This approach was successful using different primer pairs, indicating other researchers could use this approach to significantly shorten their PCR reaction times.

Disciplines
Publication Date
2000
Citation Information
Lynne A. McLandsborough and W.K. Shaw. "PCR reaction parameter titration as an approach to develop shortened reaction times in a conventional thermal cycler" Journal of Rapid Methods & Automation in Microbiology Vol. 8 (2000)
Available at: http://works.bepress.com/lynne_mclandsborough/8/