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Selected Works of Kenneth M. Stedman
Article
Stemloop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs.
Microbiology Resource Announcements
  • Alyssa A Pratt, Portland State University
  • Ellis L Torrance, Department of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
  • George W Kasun, Portland State University
  • Kenneth M Stedman, Portland State University
  • Ignacio de la Higuera, Portland State University
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Document Type
Article
Publication Date
7-1-2021
Subjects
  • DNA replication
Disciplines
Abstract

Nucleic acid secondary structures play important roles in regulating biological processes. StemLoop-Finder is a computational tool to recognize and annotate conserved structural motifs in large data sets. The program is optimized for the detection of stem-loop structures that may serve as origins of replication in circular replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses.

Rights

Copyright (c) 2021 The Authors

This work is licensed under a Creative Commons Attribution 4.0 International License.

Locate the Document

https://doi.org/10.1128/MRA.00424-21

DOI
10.1128/MRA.00424-21
Persistent Identifier
https://archives.pdx.edu/ds/psu/36037
Citation Information
Pratt, A. A., Torrance, E. L., Kasun, G. W., Stedman, K. M., & de la Higuera, I. (2021). StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs. Microbiology Resource Announcements, 10(26). https://doi.org/10.1128/mra.00424-21