Biochar application to the soil can improve soil quality and nutrient leaching loss from swine manure adapted soils. Our working hypothesis was that the biochar-incubated with manure could be a better soil amendment than conventional manure application. The manure-biochar application to the soil would decrease nutrient leaching from manure and increase plant-available nutrients. The study objectives were to 1) assess the physicochemical properties of the manure-biochar mixture after lab incubation and 2) evaluate the impact of biochar-treated swine manure on soil total C, N, and other major and minor nutrients in comparison to conventional manure application to soil. Three biochars 1) neutral pH red-oak (RO), 2) highly alkaline autothermal corn (Zea mays) stover (HAP), and 3) mild acidic Fe-treated autothermal corn stover (HAPE) were incubated with swine manure for a month. The biochar-manure mixture was applied in triplicate to soil columns with an application rate determined by the P2O5-P content in manure or manure-biochar mixtures after the incubation. The ammonium (NH4+), nitrate (NO3‒), and reactive P concentrations in soil column leachates were recorded for eight leaching events. Soil properties and plant-available nutrients were compared between treatments and control manure and soil. Manure-(HAP&HAPE) biochar treatments significantly increased soil organic matter (OM), and all biochar-manure mixture increased (numerically) soil total C, N, and improved soil bulk density. Concentrations of NH4+ and NO3‒ significantly increased in MHAPE column leachates during this 4-week study and the KCl-extractable NH4+ and NO3‒ in the soil at the end of the experiment. A significant reduction in soil Mehlich3 Cu was also observed for the manure-HAPE mixture compared with the manure control. The manure-red oak biochar significantly increased the soil Mn availability than other manure-biochar treatments or manure control. Overall, the manure-biochar incubation enabled biochar to stabilize the C and several nutrients from manure. The subsequent manure-biochar mixture application to soil improved soil quality and plant nutrient availability compared to conventional manure application. This proof-of-the-concept study suggests that biochars could be used to solve both environmental and agronomic challenges and further improve the sustainability of animal and crop production agriculture.