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Dan Nettleton
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Distinguished Professor & Chair of Statistics
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Distinguished Professor of Statistics,
Iowa State University
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Statistics and Probability
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Articles
Books and Book Chapters
Presentations
Animal Industry Reports
Pre-prints
Articles
(122)
Article
Divergent evolution of arrested development in the dauer stage of ...
Genome Biology (2007)
Axel A Elling, Makedonka Mitreva, Justin Recknor, Xiaowu Gai, et al.
Background: The soybean cyst nematode Heterodera glycines is the most important parasite in soybean production worldwide. A comprehensive analysis of ...
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Article
Spotted Cotton Oligonucleotide Microarrays for Gene Expression Analysis
BMC Genomics (2007)
Joshua A. Udall, Lex E. Flagel, Foo Cheung, Andrew W. Woodard, et al.
Microarrays offer a powerful tool for diverse applications plant biology and crop improvement. Recently, two comprehensive assemblies of cotton ESTs ...
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Article
A Discussion of Statistical Methods for Design and Analysis of ...
The Plant Cell (2006)
Dan Nettleton
There is much excitement among biologists and statisticians regarding new high-dimension data sets that have arisen from the application of ...
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Article
Estimating the number of true null hypotheses from a histogram ...
Journal of Agricultural, Biological, and Environmental Statistics (2006)
Dan Nettleton, J.T. Gene Hwang, Rico A. Caldo and Roger P. Wise
In an earlier article, an intuitively appealing method for estimating the number of true null hypotheses in a multiple test ...
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Article
Stage-Specific Suppression of Basal Defense Discriminates Barley Plants Containing Fast- ...
Molecular Plant-Microbe Interactions (2006)
Rico A. Caldo, Dan Nettleton, Jiqing Peng and Roger P. Wise
Nonspecific recognition of pathogen-derived general elicitors triggers the first line of plant basal defense, which in turn, preconditions the host ...
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Article
Scanning microarrays at multiple intensities enhances discovery of differentially expressed ...
Bioinformatics (2006)
David S. Skibbe, Xiujuan Wang, Xuefeng Zhao, Lisa A. Borsuk, et al.
Motivation: Scanning parameters are often overlooked when optimizing microarray experiments. A scanning approach that extends the dynamic data range by ...
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Article
Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a ...
Mammalian Genome (2006)
Shu-Hong Zhao, Daniel Kuhar, Joan K. Lunney, Harry Dawson, et al.
Understanding the transcriptional response to pathogenic bacterial infection within food animals is of fundamental and applied interest. To determine the ...
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Article
Gene Expression Programs during Shoot, Root, and Callus Development in ...
Plant Physiology (2006)
Ping Che, Sonia Lall, Dan Nettleton and Stephen H. Howell
Shoots can be regenerated from Arabidopsis (Arabidopsis thaliana) root explants in tissue culture through a two-step process requiring preincubation on ...
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Article
Effects of Cage Stocking Density on Feeding Behaviors of Group-Housed ...
Transactions of the ASAE (2006)
Rachel Nichole Cook, Hongwei Xin and Dan Nettleton
Quantitative measurement of animal welfare continues to be a challenging task for both the animal agriculture industry and the scientific ...
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Article
Identifying differentially expressed genes in unreplicated multiple-treatment microarray timecourse experiments
Computational Statistics & Data Analysis (2006)
Rhonda DeCook, Dan Nettleton, Carol Foster and Eve S. Wurtele
Microarray technology has become widespread as a means to investigate gene function and metabolic pathways in an organism. A common ...
Link
Article
Isolation, Characterization, and Pericycle-Specific Transcriptome Analyses of the Novel Maize ...
Plant Physiology (2005)
Katrin Woll, Lisa A. Borsuk, Harald Stransky, Dan Nettleton, et al.
The monogenic recessive maize (Zea mays) mutant rootless with undetectable meristems 1 (rum1) is deficient in the initiation of the ...
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Article
Validation of a first-generation long-oligonucleotide microarray for transcriptional profiling in ...
Genomics (2005)
Shu-Hong Zhao, Justin Recknor, Joan K. Lunney, Dan Nettleton, et al.
A first-generation porcine oligonucleotide set, representing 13,297 cDNAs and ESTs, has been designed by Qiagen–Operon for transcriptional profiling. To validate ...
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Article
Roles of the HIF-1 Hypoxia-inducible Factor during Hypoxia Response in ...
The Journal of Biological Chemistry (2005)
Chuan Shen, Dan Nettleton, Min Jiang, Stuart K, Kim, et al.
The human hypoxia-inducible transcription factor HIF-1 is a critical regulator of cellular and systemic responses to low oxygen levels. When ...
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Article
Transformation of maize with the p1 transcription factor directs production ...
Plant Biotechnology Journal (2005)
Suzy M. Cocciolone, Dan Nettleton, Maurice E. Snook and Thomas Peterson
The maize p1 gene encodes an R2R3-MYB transcription factor that controls the biosynthesis of red flavonoid pigments in floral tissues ...
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Article
BarleyBase—an expression profiling database for plant genomics
Nucleic Acids Research (2005)
Lishuang Shen, Jian Gong, Rico A. Caldo, Dan Nettleton, et al.
BarleyBase (BB) ( www.barleybase.org ) is an online database for plant microarrays with integrated tools for data visualization and statistical ...
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Article
Interaction-Dependent Gene Expression in Mla-Specified Response to Barley Powdery Mildew
The Plant Cell (2004)
Rico A. Caldo, Dan Nettleton and Roger P. Wise
Plant recognition of pathogen-derived molecules influences attack and counterattack strategies that affect the outcome of host–microbe interactions. To ascertain the ...
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Article
Feeding Behaviors of Laying Hens With or Without Beak Trimming
Transactions of the ASAE (2004)
Kelly E. Persyn, Hongwei Xin, Dan Nettleton, Atsuo Ikeguchi, et al.
This study quantifies feeding behavior of W-36 White Leghorn laying hens (77 to 80 weeks old) as influenced by the ...
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Article
Genomic neighborhoods for Arabidopsisretrotransposons: a role for targeted integration in ...
Genome Biology (2004)
Brooke D. Peterson-Burch, Dan Nettleton and Daniel F. Voytas
Background: Retrotransposons are an abundant component of eukaryotic genomes. The high quality of the Arabidopsis thaliana genome sequence makes it ...
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Article
Genomics, Prior Probability, and Statistical Tests of Multiple Hypotheses
Genome Research (2004)
Kenneth F. Manly, Dan Nettleton and J. T. Gene Hwang
Genomic methods have made statistical multiple-test methods important to geneticists and molecular biologists. These tests apply to identification of quantitative ...
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Article
Reduced-Dimension Clustering for Vegetation Segmentation
Transactions of the ASAE (2004)
Brian L. Steward, Lei F. Tian, Dan Nettleton and Lie Tang
Segmentation of vegetation is a critical step in using machine vision for field automation tasks. A new method called reduced-dimension ...
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Article
Principal Components Regression With Data Chosen Components and Related Methods
Technometrics (2003)
J. T. Gene Hwang and Dan Nettleton
Multiple regression with correlated explanatory variables is relevant to a broad range of problems in the physical, chemical, and engineering ...
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Article
Agrobacterium tumefaciens-Mediated Transformation of Maize Embryos Using a Standard Binary ...
Plant Physiology (2002)
Bronwyn R. Frame, Huixia Shou, Rachel K. Chikwamba, Zhanyuan Zhang, et al.
We have achieved routine transformation of maize (Zea mays) using an Agrobacterium tumefaciensstandard binary (non-super binary) vector system. Immature zygotic ...
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Books and Book Chapters
(1)
Contribution to Book
From Arabidopsis to Crops: The Arabidopsis QQS Orphan Gene Modulates ...
Engineering Nitrogen Utilization in Crop Plants (2018)
Seth O'Conner, Andrea Neudorf, Wenguang Zheng, Mingsheng Qi, et al.
To improve the nitrogen use efficiency (NUE) of crops to increase yields, one approach is to develop crops with improved ...
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Presentations
(4)
Presentation
Advising Graduate Students: Ten Tips for Major Professors
Center for Excellence in Learning and Teaching Presentations (2018)
Dan Nettleton
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Presentation
Regression-Enhanced Random Forests
JSM Proceedings (2017)
Haozhe Zhang, Dan Nettleton and Zhengyuan Zhu
Random forest (RF) methodology is one of the most popular machine learning techniques for prediction problems. In this article, we ...
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