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NMR-Based Molecular Ruler for Determining the Depth of Intercalants Within the Lipid Bilayer: Part III: Studies on Keto Esters and Acids
Chemistry and Physics of Lipids
  • Michal Afri, Bar-Ilan University - Ramat Gan, Israel
  • Carmit Alexenberg, Bar-Ilan University - Ramat Gan, Israel
  • Pinchas Aped, Bar-Ilan University - Ramat Gan, Israel
  • Efrat Bodner, Bar-Ilan University - Ramat Gan, Israel
  • Sarit Cohen, Bar-Ilan University - Ramat Gan, Israel
  • Michal Ejgenburg, Bar-Ilan University - Ramat Gan, Israel
  • Shlomi Eliyahu, Bar-Ilan University - Ramat Gan, Israel
  • Pessia Gilinsky-Sharon, Bar-Ilan University - Ramat Gan, Israel
  • Yifat Harel, Bar-Ilan University - Ramat Gan, Israel
  • Miriam E. Naqqash, Bar-Ilan University - Ramat Gan, Israel
  • Hani Porat, Bar-Ilan University - Ramat Gan, Israel
  • Ayala Ranz, Bar-Ilan University - Ramat Gan, Israel
  • Aryeh A. Frimer, Bar-Ilan University - Ramat Gan, Israel
Document Type
Article
Publication Date
12-1-2014
Keywords
  • Liposome,
  • 13C NMR,
  • ET,
  • DMPC,
  • Oxooctadecanoates,
  • Molecular ruler
Abstract

The development of “molecular rulers” would allow one to quantitatively locate the penetration depth of intercalants within lipid bilayers. To this end, an attempt was made to correlate the 13C NMR chemical shift of polarizable “reporter” carbons (e.g., carbonyls) of intercalants within DMPC liposomal bilayers – with the polarity it experiences, and with its Angstrom distance from the interface. This requires families of molecules with two “reporter carbons” separated by a known distance, residing at various depths/polarities within the bilayer. For this purpose, two homologous series of dicarbonyl compounds, methyl n-oxooctadecanoates and the corresponding n-oxooctadecanoic acids (n = 4–16), were synthesized. To assist in assignment and detection several homologs in each system were prepared 13C-enriched in both carbonyls. Within each family, the number of carbons and functional groups remains the same, with the only difference being the location of the second ketone carbonyl along the fatty acid chain. Surprisingly, the head groups within each family are not anchored near the lipid–water interface, nor are they even all located at the same depth. Nevertheless, using an iterative best fit analysis of the data points enables one to obtain an exponential curve. The latter gives substantial insight into the correlation between polarity (measured in terms of the Reichardt polarity parameter, ET(30)) and penetration depth into the liposomal bilayer. Still missing from this curve are data points in the moderate polarity range.

Comments

©2014 Elsevier Ireland Ltd. All rights reserved.

Additional Comments
Israel Science Foundation grant #s: 327/02, 437/06
DOI
10.1016/j.chemphyslip.2014.07.007
Citation Information
Michal Afri, Carmit Alexenberg, Pinchas Aped, Efrat Bodner, et al.. "NMR-Based Molecular Ruler for Determining the Depth of Intercalants Within the Lipid Bilayer: Part III: Studies on Keto Esters and Acids" Chemistry and Physics of Lipids Vol. 184 (2014) p. 105 - 118 ISSN: 0009-3084
Available at: http://works.bepress.com/carmit-alexenberg/13/