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Article
Automatic Identification of Individual Drugs in Death Certificates
Studies in Health Technology and Informatics
  • Soon Jye Kho
  • Amit Sheth, Wright State University - Main Campus
  • Olivier Bodenreider
Document Type
Article
Publication Date
1-1-2019
Abstract

Background:

Establishing trends of drug overdoses requires the identification of individual drugs in death certificates, not supported by coding with the International Classification of Diseases. However, identifying drug mentions from the literal portion of death certificates remains challenging due to the variability of drug names. Objectives:

To automatically identify individual drugs in death certificates. Methods:

We use RxNorm to collect variants for drug names (generic names, synonyms, brand names) and we algorithmically generate common misspellings. We use this automatically compiled list to identify drug mentions from 703,106 death certificates and compare the performance of our automated approach to that of a manually curated list of drug names. Results:

Our automated approach shows a slight loss in recall (4.3%) compared to the manual approach (for individual drugs), due in part to acronyms. Conclusions:

Maintenance of a manually curated list of drugs is not sustainable and our approach offers a viable alternative.

Comments

This article is published online with Open Access by IOS Press and distributed under the terms of the Creative Commons Attribution Non-Commercial License 4.0 (CC BY-NC 4.0).

DOI
10.3233/SHTI190208
Citation Information
Soon Jye Kho, Amit Sheth and Olivier Bodenreider. "Automatic Identification of Individual Drugs in Death Certificates" Studies in Health Technology and Informatics Vol. 264: MEDINFO 2019: Health and Wellbeing e-Networks for All (2019) p. 183 - 187
Available at: http://works.bepress.com/amit_sheth/625/