Journal articles

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Differential LongSAGE tag abundance analysis in a barley seed germination time course and validation with relative real-time RT-PCR (with Jessica F. White, Peter C. Bundock, and Robert J. Henry), Plant Science (2008)

A Long Serial Analysis of Gene Expression (LongSAGE) approach was employed to identify changes in...

 

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Abundant transcripts of malting barley identified by serial analysis of gene expression (SAGE) (with Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Peter C. Bundock, and Robert J. Henry), Plant Biotechnology Journal (2006)

Serial analysis of gene expression (SAGE) was applied to the major cereal crop barley (Hordeum...

 

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DNA Banks and their role in facilitating the application of genomics to plant germplasm (with Nicole F. Rice, Giovanni M. Cordeiro, Mervyn Shepherd, Peter C. Bundock, Louis MT Bradbury, Loraine Watson, Allison C. Crawford, Agnelo Furtado, and Robert J. Henry), Plant Genetic Resources (2006)

Advances in genomics have provided technologies for high throughput analysis of plant genomes with potential...

 

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A universal protocol for identification of cereals (with Shane R. McIntosh and Robert J. Henry), Journal of Cereal Science (2005)

Plant fingerprinting and identification has increasingly become a focus in commerce and manufacturing with an...

 

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Consistent production of cost-effective LongSAGE libraries (with Allison C. Crawford, Jessica F. White, Peter C. Bundock, Giovanni Cordeiro, Shane R. McIntosh, Lee Rooke, and Robert J. Henry), Plant Molecular Biology Reporter (2005)

Serial analysis of gene expression (SAGE) and related techniques are gaining popularity as tools for...

 

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Genes associated with the end of dormancy in grapes (with Kirsten D. Scott, Effie M. Ablett, Scott V. Tingey, Ada Ching, and Robert J. Henry), Functional and Integrative Genomics (2003)

A grape bud EST library was constructed and 4,270 ESTs sequenced. The library clones were...

 

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Single-nucleotide polymorphism detection in plants using a single-stranded gyrosequencing protocol with a universal biotinylated primer' (with Robert J. Henry), Analytical Biochemistry (2003)

Analysis of variations in plant genomes is increasingly focused on single-nucleotide polymorphism (SNP) analysis, increasing...

 

Conference publications

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Custom wheat microarray development for analysis of grain quality (with Peter C. Bundock and Robert J. Henry), 11th International Wheat Genetics Symposium (2008)

Many genes influencing wheat grain quality are expressed during seed development. Custom microarrays have been...

 

Grain quality analysis using a custom wheat microarray (with Peter C. Bundock and Robert J. Henry), 58th Australian Cereal Chemistry Conference (2008)

Custom microarrays can be used to examine genes influencing wheat grain quality that are expressed...

 

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Characterisation of the malting barley transcriptome (with Jessica F. White, Allison C. Crawford, Peter C. Bundock, Giovanni M. Cordeiro, and Robert J. Henry), 13th Australian Barley Technical Symposium (2007)

The introduction of large-scale gene expression technologies such as serial analysis of gene expression (SAGE)...

 

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Rapid malt - the path to faster malting barley (with Jessica F. White, Peter C. Bundock, and Robert J. Henry), 13th Australian Barley Technical Symposium (2007)

Malt analysis provides guidance on the effectiveness of the malting process and the suitability of...

 

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Understanding gene expression in the developing grain (with Loraine Watson, Jessica F. White, Shane R. McIntosh, Allison C. Crawford, Peter C. Bundock, Daniel Barbary, Giovanni M. Cordeiro, and Robert J. Henry), 57th Australian Cereal Chemistry Conference (2007)

Serial Analysis of Gene Expression (SAGE) has been used to understand more comprehensively the gene...

 

Unlocking the mysteries of malting using SAGE (with Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Peter C. Bundock, and Robert J. Henry), International Plant and Animal Genome Conference XV, 13-17 January. (2007)

Barley and its malting potential are of great economical importance worldwide. The processes involved in...

 

Analysis of the triticeae seed transcriptome (with Peter C. Bundock, Allison C. Crawford, Shane R. McIntosh, Jessica F. White, Lee Rooke, Daniel Barbary, Linh Nguyen, Loraine Watson, and Robert J. Henry), International Triticeae Mapping Inititative (ITMI) Workshop and the Australian Centre for Plant Functional Genomics (ACPFG) Symposium (2006)
 

Cereal quality improvement using genomic tools (with Robert J. Henry, Daniel LE Waters, Louis MT Bradbury, Timothy L. Fitzgerald, Allison C. Crawford, Loraine Watson, Shane McIntosh, Giovanni M. Cordeiro, Daniel Barbary, and Peter C. Bundock), ISPMB 8th International Congress of Plant Molecular Biology (2006)
 

Characterisation of the malting barley transcriptome using SAGE (with Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Peter C. Bundock, and Robert J. Henry), International Plant and Animal Genome Conference XIV (2006)

Long Serial Analysis of Gene Expression (SAGE) is a technique that enables the analysis of...

 

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Malting quality improvement using SAGE (with Loraine Watson, Jessica F. White, Allison C. Crawford, Peter C. Bundock, Giovanni M. Cordeiro, Daniel Barbary, Shane R. McIntosh, and Robert J. Henry), Cereals 2006 : proceedings of the 56th Australian Cereal Chemistry Conference and Indian Ocean Rim Symposium (2006)
 

Mining genomes for improved product quality and human nutrition (with Robert J. Henry, Louis MT Bradbury, Peter C. Bundock, Giovanni M. Cordeiro, Michael J. Cross, Allison C. Crawford, Timothy L. Fitzgerald, Liz Izquierdo, Brett G. Kennedy, L Slade Lee, Shane R. McIntosh, Nicole F. Rice, Frances M. Shapter, Loraine Watson, Jessica F. White, and Daniel LE Waters), Plant and Animal Genomes Conference XIV (2006)

Analysis of polymorphisms at the SNP level has been facilitated by the development and application...

 

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Serial analysis of gene expression of malting barley (with Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Peter C. Bundock, and Robert J. Henry), ISPMB 8th International Congress of Plant Molecular Biology (2006)
 

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The mature cereal seed transcriptome (with Loraine Watson, Jessica F. White, Allison C. Crawford, Peter C. Bundock, Giovanni M. Cordeiro, Daniel Barbary, Glen P. Fox, Shane McIntosh, and Robert J. Henry), ISPMB 8th International Congress of Plant Molecular Biology (2006)

Understanding the gene expression profile of the dry seed of both barley and wheat is...

 

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Using longSAGE to study cereal gene expression during grain development and germination (with Peter C. Bundock, Allison C. Crawford, Jessica F. White, Shane R. McIntosh, Giovanni M. Cordeiro, Lee Rooke, Linh Nguyen, Gary A. Ablett, Loraine Watson, and Robert J. Henry), Plant and Animal Genomes Conference XIV (2006)

Many methods of studying gene expression rely on previous knowledge of gene sequences to quantify...

 

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Cost effective SAGE libraries for wheat and barley (with Allison C. Crawford, Jessica F. White, Peter C. Bundock, Giovanni M. Cordeiro, Shane R. McIntosh, Lee Rooke, and Robert J. Henry), Plant and Animal Genomes Conference XIII (2005)

Serial analysis of gene expression (SAGE) is rapidly becoming a popular technique for transcript identification...

 

SAGE and the mysteries of malting (with Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Peter C. Bundock, and Robert J. Henry), Proceedings of the 12th Australian Barley Technical Symposium (2005)
 

Serial analysis of cereals (with Jessica F. White, Allison C. Crawford, Peter C. Bundock, Giovanni M. Cordeiro, and Robert J. Henry), Proceedings of the 12th Australian Barley Technical Symposium (2005)

Serial Analysis of Gene Expression (SAGE) is a technique that allows genome-wide expression studies based...

 

Unraveling the mysteries of germination using SAGE (serial analysis of gene expression) (with Jessica F. White, Allison C. Crawford, Peter C. Bundock, Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), 18th Northern American Barley Researchers Workshop and 4th Canadian Barley Symposium (2005)

The processes involved in malting are still somewhat a mystery on a genetic level. SAGE...

 

Building a cereal grain quality genomics platform (with Robert J. Henry, Peter C. Bundock, Allison C. Crawford, Jessica F. White, Giovanni M. Cordeiro, Lee Rooke, and Shane McIntosh), Cereals 2004: Proceedings of the 54th Australian Cereal Chemistry Conference and 11th Wheat Breeders Assembly (2004)
 

Gene expression in malting barley using SAGE (Serial Analysis of Gene Expression) (with Peter C. Bundock, Allison C. Crawford, Jessica F. White, and Robert J. Henry), Cereals 2004: Proceedings of the 54th Australian Cereal Chemistry Conference and 11th Wheat Breeders Assembly (2004)
 

SAGE – unraveling the mysteries of germination (with Peter C. Bundock, Allison C. Crawford, Jessica F. White, and Robert J. Henry), Integrative Post-Genomics Conference (2004)

The blueprint to a new generation is contained within the seed. The processes in-volved in...

 

Barley variety identification using pyrosequencing (with Peter C. Bundock and Robert J. Henry), Barley Technical / Cereal Chemistry Conference: Proceedings of the 11th Australian Barley Symposium and the 53rd Australian Cereal Chemistry Conference (2003)
 

Gene discovery in grapes: the grape genome project (with Effie M. Ablett, L Slade Lee, Daniel LE Waters, Guo-Hua Miao, Maureen Dolan, Michael Hanafey, Scott V. Tingey, and Robert J. Henry), Congress on In Vitro Biology (2003)

The grape genome project is combining large-scale EST analysis, a 16 times BAC library, and...

 

Single nucleotide polymorphism analysis in support of plant breeding (with Robert J. Henry, Peter C. Bundock, Brett G. Kennedy, Gary A. Ablett, Daniel LE Waters, and Qingsheng Jin), 12th Australasian Plant Breeding Conference (2003)
 

SNP discovery and analysis in plant genomes (with Robert J. Henry, Brett G. Kennedy, Peter C. Bundock, Gary A. Ablett, Giovanni M. Cordeiro, Daniel LE Waters, and Mervyn Shepherd), Genomes: the Linkage to Life: XIX International Genetics Congress (2003)
 

SNP identification in plants using pyrosequencing (with Robert J. Henry), ComBio 2003 (2003)
 

Grapevine ESTs: expression comparisons and access to sequences (with L Slade Lee, Effie M. Ablett, Giovanni M. Cordeiro, Daniel LE Waters, and Robert J. Henry), Plant, Animal and Microbe Genomes X Conference (2002)
 

Changes in gene expression associated with the end of dormancy in grapes (with Kirsten D. Scott, Effie M. Ablett, Robert J. Henry, Scott V. Tingey, J Antoni Rafalski, and Ada Ching), 22nd Lorne Genome Conference (2001)