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SelectedWorks of Ray Enke Ph.D.
Handout
Genomics RNA-seq Analysis part 1-CyVerse DE, FastQC, Trimmomatic (updated 11/17)
Genomics (2017)
  • Ray A Enke
  • Melika Rahmani-Mofrad
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Description
This in class exercise is designed to teach students about the basic features of CyVerse Discovery Environment (DE) as well as how to run FastQC and Trimmomatic steps of a general eukaryotic RNA-seq analysis pipeline using CyVerse DE apps.
Keywords
  • RNA-seq,
  • FastQC,
  • Kallisto,
  • CyVerse,
  • Discovery Environment,
  • Trimmomatic
Disciplines
Publication Date
2017
Citation Information
Ray A Enke and Melika Rahmani-Mofrad. "Genomics RNA-seq Analysis part 1-CyVerse DE, FastQC, Trimmomatic (updated 11/17)" Genomics (2017)
Available at: http://works.bepress.com/raymond_enke/92/
Creative Commons license
Creative Commons License
This work is licensed under a Creative Commons CC_BY-NC-SA International License.