Handout
FASTQC Analysis & HISAT Alignments Using CyVerse (part 1)
Bio 481 Genomics
(2018)
Description
This in class exercise demonstrates the basic features of the CyVerse Discovery Environment (DE) cyberinfrastructure and also provides a tutorial for setting up FastQC analysis of next generation sequencing reads as well as HISAT alignment of eukaryotic RNA-seq FASTQ files.
Keywords
- FastQC,
- HISAT,
- CyVerse,
- RNA-seq,
- metagenomics
Disciplines
Publication Date
November, 2018
Citation Information
Ray A Enke. "FASTQC Analysis & HISAT Alignments Using CyVerse (part 1)" Bio 481 Genomics (2018) Available at: http://works.bepress.com/raymond_enke/104/
Creative Commons license
This work is licensed under a Creative Commons CC_BY-SA International License.