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Genome sequencing for marker discovery in sugarcane (with Robert J. Henry, Karen S. Aitken, and Rosanne E. Casu), Plant and Animal Genomes XVIII Conference (2010)
The sequencing of the sugarcane genome to produce a complete assembled sequence will be an...
 
Comparative mapping of a sugarcane genetic map to the sorghum genome (with Karen S. Aitken, Meredith D. McNeil, Scott Hermann, Frances G. Eliott, Katarzyna Heller-Uszynska, Andrzej Kilian, Robert J. Henry, and Philip Jackson), 14th Australasian Plant Breeding Conference (APBC) held in conjunction with the 11th Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO) Congress (2009)
 
Discovering SNPs for gene mapping in sugarcane using deep sequencing (with Frances G. Eliott, Gary A. Ablett, Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, and Robert J. Henry), Plant and Animal Genomes XVII Conference (2009)
As part of a marker program for QTL discovery, 313 sugarcane genes were targeted for...
 
Discovery of single nucleotide polymorphisms in sugarcane for gene mapping using 454 sequencing (with Frances G. Eliott, Gary A. Ablett, Adam D. Benson, Stirling Bowen, and Robert J. Henry), High-Throughput Genomic Technologies: the 9th Annual Meeting of the Australasian Microarray and Associated Technologies Association (AMATA) (2009)
Sugarcane is genetically complex due to polyploidy, aneuploidy and hybridisation which have led to a...
 
High through put discovery and analysis of genetic markers in sugarcane (with Frances G. Eliott, Stirling Bowen, and Robert J. Henry), 14th Australasian Plant Breeding Conference (APBC) held in conjunction with the 11th Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO) Congress (2009)
 
Next generation genotyping (with Robert J. Henry, Nicole F. Rice, Mervyn Shepherd, Stirling Bowen, and Mark A. Edwards), 14th Australasian Plant Breeding Conference (APBC) held in conjunction with the 11th Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO) Congress (2009)
 
Next-generation sequencing of plant genomes (with Nicole F. Rice, Catherine J. Nock, Daniel LE Waters, Mervyn Shepherd, Stirling Bowen, Mark A. Edwards, and Robert J. Henry), NSW Bioinformatics Research Symposium (2009)
 
Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing (with Frances G. Eliott, Gary A. Ablett, Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, and Robert J. Henry), Plant Biotechnology Journal (2009)
Discovering single nucleotide polymorphisms (SNPs) in specific genes in a heterozygous polyploid plant species, such...
 
Using Mass Spectrometry (Sequenom MALDI-TOF) to genotype sugarcane (with Frances G. Eliott, Peter Eggler, Stirling Bowen, and Robert J. Henry), Australian Society of Sugar Cane Technologists (ASSCT) Conference, 29 April - 2 May (2008)

DNA markers of various kinds (AFLPs, SSRs, SNPs etc.) are being used for many crop...

 

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Custom wheat microarray development for analysis of grain quality (with Toni Pacey-Miller and Robert J. Henry), 11th International Wheat Genetics Symposium (2008)
Many genes influencing wheat grain quality are expressed during seed development. Custom microarrays have been...
 
Detection and stability of quantative trait loci (QTL) in Eucalyptus globulus (with Brad M. Potts and Rene E. Vaillancourt), Tree Genetics & Genomes (2008)

Eucalyptus globulus Labill. ssp. globulus is an important tree species for the pulp and paper...

 
Differential LongSAGE tag abundance analysis in a barley seed germination time course and validation with relative real-time RT-PCR (with Jessica F. White, Toni Pacey-Miller, and Robert J. Henry), Plant Science (2008)

A Long Serial Analysis of Gene Expression (LongSAGE) approach was employed to identify changes in...

 
Genotyping by allele specific PCR (with Daniel LE Waters and Robert J. Henry), Plant genotyping II: SNP technology (2008)
 
Grain quality analysis using a custom wheat microarray (with Toni Pacey-Miller and Robert J. Henry), 58th Australian Cereal Chemistry Conference (2008)
Custom microarrays can be used to examine genes influencing wheat grain quality that are expressed...
 
Personalised plant genetic analysis (with Daniel LE Waters, Julie A. Pattemore, Nicole F. Rice, Frances G. Eliott, and Robert J. Henry), 58th Australian Cereal Chemistry Conference (2008)
Individual people respond to drugs differently in a genotype dependant manner. One of the key...
 
SNP discovery by ecotilling using capillary electrophoresis (with Frances G. Eliott, Giovanni M. Cordeiro, and Robert J. Henry), Plant genotyping II: SNP technology (2008)
 

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Adaptive climatic molecular evolution in wild barley at the Isa defense locus (with James K. Cronin, Robert J. Henry, and Eviatar Nevo), Proceedings of the National Academy of Science of the United States of America (2007)
Wild barley (Hordeum spontaneum) represents a significant genetic resource for crop improvement in barley (Hordeum...
 

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Characterisation of the malting barley transcriptome (with Jessica F. White, Toni Pacey-Miller, Allison C. Crawford, Giovanni M. Cordeiro, and Robert J. Henry), 13th Australian Barley Technical Symposium (2007)
The introduction of large-scale gene expression technologies such as serial analysis of gene expression (SAGE)...
 
Diversity in a plant defense locus in wild barley populations is strongly correlated with water availability (with James K. Cronin, Agnelo Furtado, Robert J. Henry, and Eviatar Nevo), Plant and Animal Genomes Conference XV, Population and Conservation Genomics workshop (2007)
Wild barley (Hordeum spontaneum) represents a significant genetic resource for crop improvement in barley (Hordeum...
 
Genomics approaches to analysis of genetic adaptation to climate in barley (with Robert J. Henry, James K. Cronin, Agnelo Furtado, and Eviatar Nevo), 13th Australian Barley Technical Symposium (2007)
Wild barley (Hordeum spontaneum) represents a significant genetic resource for crop improvement in barley (Hordeum...
 
Genotyping of single nucleotide polymorphisms in sugarcane using mass spectrometry and CEL I polymorphism detection (with Frances G. Elliott, Giovanni M. Cordeiro, and Robert J. Henry), International Plant and Animal Genome Conference XV, International Consortium of Sugar Biotechnology Workshop, 13-17 January (2007)

Genetic linkage maps of sugarcane have to date been largely based on one or a...

 

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Rapid malt - the path to faster malting barley (with Toni Pacey-Miller, Jessica F. White, and Robert J. Henry), 13th Australian Barley Technical Symposium (2007)
Malt analysis provides guidance on the effectiveness of the malting process and the suitability of...
 
SAGE of the developing wheat caryopsis (with Shane McIntosh, Loraine Watson, Allison C. Crawford, Jessica F. White, Giovanni M. Cordeiro, Daniel Barbary, Lee Rooke, and Robert J. Henry), Plant Biotechnology Journal (2007)
Understanding the development of the cereal caryopsis holds the future for metabolic engineering in the...
 

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Understanding gene expression in the developing grain (with Toni Pacey-Miller, Loraine Watson, Jessica F. White, Shane R. McIntosh, Allison C. Crawford, Daniel Barbary, Giovanni M. Cordeiro, and Robert J. Henry), 57th Australian Cereal Chemistry Conference (2007)
Serial Analysis of Gene Expression (SAGE) has been used to understand more comprehensively the gene...
 
Unlocking the mysteries of malting using SAGE (with Toni Pacey-Miller, Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), International Plant and Animal Genome Conference XV, 13-17 January. (2007)
Barley and its malting potential are of great economical importance worldwide. The processes involved in...
 
Abundant transcripts of malting barley identified by serial analysis of gene expression (SAGE) (with Jessica F. White, Toni Pacey-Miller, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), Plant Biotechnology Journal (2006)
Serial analysis of gene expression (SAGE) was applied to the major cereal crop barley (Hordeum...
 
Analysis of the genes expressed in the grains of cereals (with Robert J. Henry, Shane McIntosh, Loraine Watson, Allison C. Crawford, Jessica White, Giovanni M. Cordeiro, Daniel Barbary, and Lee Rooke), 56th Australian Cereal Chemistry Conference (2006)
 
Analysis of the triticeae seed transcriptome (with Allison C. Crawford, Shane R. McIntosh, Jessica F. White, Lee Rooke, Toni Pacey-Miller, Daniel Barbary, Linh Nguyen, Loraine Watson, and Robert J. Henry), International Triticeae Mapping Inititative (ITMI) Workshop and the Australian Centre for Plant Functional Genomics (ACPFG) Symposium (2006)
 
Cereal quality improvement using genomic tools (with Robert J. Henry, Daniel LE Waters, Louis MT Bradbury, Timothy L. Fitzgerald, Toni Pacey-Miller, Allison C. Crawford, Loraine Watson, Shane McIntosh, Giovanni M. Cordeiro, and Daniel Barbary), ISPMB 8th International Congress of Plant Molecular Biology (2006)
 
Characterisation of the malting barley transcriptome using SAGE (with Jessica F. White, Toni Pacey-Miller, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), International Plant and Animal Genome Conference XIV (2006)
Long Serial Analysis of Gene Expression (SAGE) is a technique that enables the analysis of...
 
DNA Banks and their role in facilitating the application of genomics to plant germplasm (with Nicole F. Rice, Giovanni M. Cordeiro, Mervyn Shepherd, Louis MT Bradbury, Loraine Watson, Allison C. Crawford, Toni Pacey-Miller, Agnelo Furtado, and Robert J. Henry), Plant Genetic Resources (2006)
Advances in genomics have provided technologies for high throughput analysis of plant genomes with potential...
 

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Malting quality improvement using SAGE (with Toni Pacey-Miller, Loraine Watson, Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Shane R. McIntosh, and Robert J. Henry), Cereals 2006 : proceedings of the 56th Australian Cereal Chemistry Conference and Indian Ocean Rim Symposium (2006)
 
Mining genomes for improved product quality and human nutrition (with Robert J. Henry, Louis MT Bradbury, Giovanni M. Cordeiro, Michael J. Cross, Allison C. Crawford, Timothy L. Fitzgerald, Liz Izquierdo, Brett G. Kennedy, L Slade Lee, Shane R. McIntosh, Toni Pacey-Miller, Nicole F. Rice, Frances M. Shapter, Loraine Watson, Jessica F. White, and Daniel LE Waters), Plant and Animal Genomes Conference XIV (2006)
Analysis of polymorphisms at the SNP level has been facilitated by the development and application...
 
Robust allele-specific PCR markers developed for SNP’s in expressed barley sequences (with Michael J. Cross, Frances M. Shapter, and Robert J. Henry), Theoretical and Applied Genetics (2006)

Many methods have been developed to assay for single nucleotide polymorphisms (SNPs), but generally these...

 
Robust allele-specific polymerase chain reaction markers developed for single nucleotide polymorphisms in expressed barley sequences (with Michael J. Cross, Frances M. Shapter, and Robert J. Henry), Theoretical and Applied Genetics (2006)
Many methods have been developed to assay for single nucleotide polymorphisms (SNPs), but generally these...
 

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SAGE of the developing wheat caryopsis (Presentation) (with Shane McIntosh, Loraine Watson, Allison C. Crawford, Jessica F. White, Giovanni M. Cordeiro, Daniel Barbary, Lee Rooke, and Robert J. Henry), ISPMB 8th International Congress of Plant Molecular Biology (2006)
Understanding the development of the cereal caryopsis holds the future for metabolic engineering in the...
 

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SCAMing: an efficient high throughput approach to discovery and analysis of Snps for genotyping of tropical crop species (with Frances G. Eliott, Giovanni M. Cordeiro, Nicole F. Rice, James K. Cronin, Daniel LE Waters, Stirling Bowen, and Robert J. Henry), Tropical Crop Biotechnology Conference (2006)
Model organisms have well established genetic marker tools. However, genotyping of the wide range of...
 

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Serial analysis of gene expression of malting barley (with Jessica F. White, Toni Pacey-Miller, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), ISPMB 8th International Congress of Plant Molecular Biology (2006)
 
Sucrose phosphate synthase gene family isolation and characterisation in sugarcane (with Ouzi Amouyal, Robert J. Henry, and Giovanni M. Cordeiro), Combio 2006 (2006)
The sucrose phosphate synthase (SPS) genes in sugarcane are encoded by a large multigenic family....
 

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The mature cereal seed transcriptome (with Toni Pacey-Miller, Loraine Watson, Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, Glen P. Fox, Shane McIntosh, and Robert J. Henry), ISPMB 8th International Congress of Plant Molecular Biology (2006)
Understanding the gene expression profile of the dry seed of both barley and wheat is...
 

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Using longSAGE to study cereal gene expression during grain development and germination (with Allison C. Crawford, Jessica F. White, Shane R. McIntosh, Giovanni M. Cordeiro, Toni Pacey-Miller, Lee Rooke, Linh Nguyen, Gary A. Ablett, Loraine Watson, and Robert J. Henry), Plant and Animal Genomes Conference XIV (2006)
Many methods of studying gene expression rely on previous knowledge of gene sequences to quantify...
 
A genome-wide approach to better wheat grain fractionation during milling (with Loraine Watson, Shane R. McIntosh, Giovanni M. Cordeiro, Daniel Barbary, Allison C. Crawford, Jessica F. White, Lee Rooke, and Robert J. Henry), Connect 2005: chemical challenges for the 21st century: the 12th Royal Australian Chemical Institute Convention (2005)
 
Allele specific PCR markers for single nucleotide polymorphisms in barley (with Michael J. Cross, Frances M. Shapter, and Robert J. Henry), 12th Australian Barley Technical Symposium (2005)
 
Consistent production of cost-effective LongSAGE libraries (with Allison C. Crawford, Jessica F. White, Giovanni Cordeiro, Shane R. McIntosh, Toni Pacey-Miller, Lee Rooke, and Robert J. Henry), Plant Molecular Biology Reporter (2005)
Serial analysis of gene expression (SAGE) and related techniques are gaining popularity as tools for...
 

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Cost effective SAGE libraries for wheat and barley (with Allison C. Crawford, Jessica F. White, Giovanni M. Cordeiro, Shane R. McIntosh, Toni Pacey-Miller, Lee Rooke, and Robert J. Henry), Plant and Animal Genomes Conference XIII (2005)
Serial analysis of gene expression (SAGE) is rapidly becoming a popular technique for transcript identification...
 
Development of robust allele specific PCR based SNP markers for barley (with Michael J. Cross, Frances M. Shapter, and Robert J. Henry), Plant & Animal Genomes XIII Conference (2005)
Numerous methods have been developed for genotyping SNPs, however many of these depend on expensive...
 
grainSAGE - A database system for the management and analysis of SAGE tag sequences (with Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), Proceedings of the 13th international conference on intelligent systems for molecular biology (2005)
We have developed grainSAGE, a data warehousing facility to store and analyse large sample sets...
 
SAGE and the mysteries of malting (with Toni Pacey-Miller, Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), Proceedings of the 12th Australian Barley Technical Symposium (2005)
 
Serial analysis of cereals (with Jessica F. White, Toni Pacey-Miller, Allison C. Crawford, Giovanni M. Cordeiro, and Robert J. Henry), Proceedings of the 12th Australian Barley Technical Symposium (2005)
Serial Analysis of Gene Expression (SAGE) is a technique that allows genome-wide expression studies based...
 
Unraveling the mysteries of germination using SAGE (serial analysis of gene expression) (with Toni Pacey-Miller, Jessica F. White, Allison C. Crawford, Giovanni M. Cordeiro, Daniel Barbary, and Robert J. Henry), 18th Northern American Barley Researchers Workshop and 4th Canadian Barley Symposium (2005)
The processes involved in malting are still somewhat a mystery on a genetic level. SAGE...
 
Building a cereal grain quality genomics platform (with Robert J. Henry, Allison C. Crawford, Jessica F. White, Giovanni M. Cordeiro, Lee Rooke, Shane McIntosh, and Toni Pacey-Miller), Cereals 2004: Proceedings of the 54th Australian Cereal Chemistry Conference and 11th Wheat Breeders Assembly (2004)
 
Gene expression in malting barley using SAGE (Serial Analysis of Gene Expression) (with Toni Pacey-Miller, Allison C. Crawford, Jessica F. White, and Robert J. Henry), Cereals 2004: Proceedings of the 54th Australian Cereal Chemistry Conference and 11th Wheat Breeders Assembly (2004)
 
Haplotype diversity and recombination in the Isa gene of barley (with Robert J. Henry), Proceedings of the 9th International Barley Genetics Symposium (2004)
 
SAGE – unraveling the mysteries of germination (with Toni Pacey-Miller, Allison C. Crawford, Jessica F. White, and Robert J. Henry), Integrative Post-Genomics Conference (2004)
The blueprint to a new generation is contained within the seed. The processes in-volved in...
 
Barley variety identification using pyrosequencing (with Toni Pacey-Miller and Robert J. Henry), Barley Technical / Cereal Chemistry Conference: Proceedings of the 11th Australian Barley Symposium and the 53rd Australian Cereal Chemistry Conference (2003)
 
Co-evolution of alpha-amylase and alpha-amylase inhibitors in the domestication of barley (with Robert J. Henry and Agnelo Furtado), ISPMB 2003: the 7th International Congress of Plant Molecular Biology (2003)
 
Pericarp specific gene expression in cereals (with Robert J. Henry and Agnelo Furtado), Society of Experimental Biology Symposium (2003)
 
Polymorphism analysis of the asi gene from barley (with Robert J. Henry), Barley Technical / Cereal Chemistry Conference: Proceedings of the 11th Australian Barley Symposium and the 53rd Australian Cereal Chemistry Conference (2003)
 
Polymorphism analysis of the asi gene from barley (Presentation Plant and Animal Genomes XI Conference) (with Robert J. Henry), Plant and Animal Genomes XI Conference (2003)
Studies of genetic variability in crop plants are often based on polymorphism of DNA markers...
 
Polymorphism analysis of the asi gene from barley (Presentation Plant and Animal Genomes XI Conference) (with Robert J. Henry), Plant and Animal Genomes XI Conference (2003)
Studies of genetic variability in crop plants are often based on polymorphism of DNA markers...
 
Single nucleotide polymorphism analysis in support of plant breeding (with Robert J. Henry, Toni Pacey-Miller, Brett G. Kennedy, Gary A. Ablett, Daniel LE Waters, and Qingsheng Jin), 12th Australasian Plant Breeding Conference (2003)
 
Single nucleotide polymorphisms in cytochrome P450 genes from barley (with John T. Christopher, Peter Eggler, Gary A. Ablett, Robert J. Henry, and Timothy A. Holton), TAG Theoretical and Applied Genetics (2003)
Plant cytochrome P450s are known to be essential in a number of economically important pathways...
 
SNP discovery and analysis in plant genomes (with Robert J. Henry, Toni Pacey-Miller, Brett G. Kennedy, Gary A. Ablett, Giovanni M. Cordeiro, Daniel LE Waters, and Mervyn Shepherd), Genomes: the Linkage to Life: XIX International Genetics Congress (2003)
 
Diversity in plant alpha-amylase inhibitors (with Robert J. Henry), Plant Polysaccharide Workshop (2002)
 
Emerging molecular technology for rapid variety identification and detection of variety contamination (with Gary A. Ablett, Effie M. Ablett, Brett G. Kennedy, Nicole F. Rice, and Robert J. Henry), Cereals 2002: Proceedings of the 52nd Australian Cereal Chemistry Conference (2002)
 
Cloning and characterisation of cytochrome P450 genes from barley (Hordeum vulgare) (with Linh Nguyen, Angela Delves, and Timothy A. Holton), Proceedings of the 10th Australian Barley Technical Symposium (2001)

Plant P450s belong to the cytochrome group that are membrane-bound enzymes, usually found in plant...

 
Detection of SNPs in ESTs from wheat and barley (with Timothy A. Holton, John T. Christopher, and Robert J. Henry), International Triticeae Mapping Initiative Edinburgh and SCRI (2001)
 

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Linkage maps of Eucalyptus globulus using RAPD and microsatellite markers (with M Hayden and Rene E. Vaillancourt), Silvae Genetica (2000)

The construction of linkage maps based on RAPD markers using F1 intraprovenance cross in Eucalyptus...

 
RAPD and microsatellite marker maps from an intraprovenance cross in Eucalyptus globulus (with Rene E. Vaillancourt), Symposium on Molecular Genetics of Eucalypts (1999)