Skip to main content
Article
The Plant Ontology Database: A Community Resource for Plant Structure and Developmental Stages Controlled Vocabulary and Annotations
Nucleic Acids Research (2008)
  • Shulamit Avraham, Carnegie Institution for Science
  • Chih-Wei Tung, Cornell University
  • Katica Ilic, Carnegie Institution for Science
  • Pankaj Jaiswal, Oregon State University
  • Elizabeth A. Kellogg, University of Missouri–St. Louis
  • Susan McCouch, Cornell University
  • Anuradha Pujar, Boyce Thompson Institute for Plant Research
  • Leonore Reiser, Carnegie Institution for Science
  • Seung Yon Rhee, Carnegie Institution for Science
  • Martin M. Sachs, University of Illinois at Urbana–Champaign
  • Mary L. Schaeffer, Agricultural Research Service
  • Lincoln Stein, Carnegie Institution for Science
  • Peter Stevens, Harvard University
  • Leszek Vincent, University of Missouri
  • Felipe Zapata, University of Missouri
  • Doreen Ware, Carnegie Institution for Science
Abstract
The Plant Ontology Consortium (POC, http://www.plantontology.org ) is a collaborative effort among model plant genome databases and plant researchers that aims to create, maintain and facilitate the use of a controlled vocabulary (ontology) for plants. The ontology allows users to ascribe attributes of plant structure (anatomy and morphology) and developmental stages to data types, such as genes and phenotypes, to provide a semantic framework to make meaningful cross-species and database comparisons. The POC builds upon groundbreaking work by the Gene Ontology Consortium (GOC) by adopting and extending the GOC's principles, existing software and database structure. Over the past year, POC has added hundreds of ontology terms to associate with thousands of genes and gene products from Arabidopsis , rice and maize, which are available through a newly updated web-based browser ( http://www.plantontology.org/amigo/go.cgi ) for viewing, searching and querying. The Consortium has also implemented new functionalities to facilitate the application of PO in genomic research and updated the website to keep the contents current. In this report, we present a brief description of resources available from the website, changes to the interfaces, data updates, community activities and future enhancement.
Publication Date
January 1, 2008
DOI
10.1093/nar/gkm908
Citation Information
Shulamit Avraham, Chih-Wei Tung, Katica Ilic, Pankaj Jaiswal, et al.. "The Plant Ontology Database: A Community Resource for Plant Structure and Developmental Stages Controlled Vocabulary and Annotations" Nucleic Acids Research Vol. 36 Iss. 1 (2008) p. 449 - 454
Available at: http://works.bepress.com/peter-stevens/15/