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Article
Kinetic Competition During the Transcription Cycle Results in Stochastic RNA Processing
eLife
  • Antoine Coulon, National Institutes of Health
  • Matthew L. Ferguson, National Cancer Institute
  • Valeria de Turris, Istituto Italiano di Tecnologia
  • Murali Palangat, National Cancer Institute
  • Carson C. Chow, National Institutes of Health
  • Daniel R. Larson, National Cancer Institute
Document Type
Article
Publication Date
10-1-2014
DOI
http://dx.doi.org/10.7554/eLife.03939
Disciplines
Abstract

Synthesis of mRNA in eukaryotes involves the coordinated action of many enzymatic processes, including initiation, elongation, splicing, and cleavage. Kinetic competition between these processes has been proposed to determine RNA fate, yet such coupling has never been observed in vivo on single transcripts. In this study, we use dual-color single-molecule RNA imaging in living human cells to construct a complete kinetic profile of transcription and splicing of the β-globin gene. We find that kinetic competition results in multiple competing pathways for pre-mRNA splicing. Splicing of the terminal intron occurs stochastically both before and after transcript release, indicating there is not a strict quality control checkpoint. The majority of pre-mRNAs are spliced after release, while diffusing away from the site of transcription. A single missense point mutation (S34F) in the essential splicing factor U2AF1 which occurs in human cancers perturbs this kinetic balance and defers splicing to occur entirely post-release.

Copyright Statement

This document was originally published by eLife Sciences Publications, Ltd. in eLife. This work is provided under a Creative Commons Public Domain Dedication. Details regarding the use of this work can be found at: http://creativecommons.org/publicdomain/zero/1.0/. doi: 10.7554/eLife.03939

Citation Information
Antoine Coulon, Matthew L. Ferguson, Valeria de Turris, Murali Palangat, et al.. "Kinetic Competition During the Transcription Cycle Results in Stochastic RNA Processing" eLife (2014)
Available at: http://works.bepress.com/matthew_ferguson/16/