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Optimization of enzyme parameters for fermentative production of biorenewable fuels and chemicals
Computational and Structural Biotechnology Journal
  • Laura R. Jarboe, Iowa State University
  • Ping Liu, Iowa State University
  • Kumar Babu Kautharapu, Iowa State University
  • Lonnie O. Ingram, University of Florida
Document Type
Article
Publication Date
10-1-2012
DOI
10.5936/csbj.201210005
Abstract

Microbial biocatalysts such as Escherichia coli and Saccharomyces cerevisiae have been extensively subjected to Metabolic Engineering for the fermentative production of biorenewable fuels and chemicals. This often entails the introduction of new enzymes, deletion of unwanted enzymes and efforts to fine-tune enzyme abundance in order to attain the desired strain performance. Enzyme performance can be quantitatively described in terms of the Michaelis-Menten type parameters Km, turnover number kcat and Ki, which roughly describe the affinity of an enzyme for its substrate, the speed of a reaction and the enzyme sensitivity to inhibition by regulatory molecules. Here we describe examples of where knowledge of these parameters have been used to select, evolve or engineer enzymes for the desired performance and enabled increased production of biorenewable fuels and chemicals. Examples include production of ethanol, isobutanol, 1-butanol and tyrosine and furfural tolerance. The Michaelis- Menten parameters can also be used to judge the cofactor dependence of enzymes and quantify their preference for NADH or NADPH. Similarly, enzymes can be selected, evolved or engineered for the preferred cofactor preference. Examples of exporter engineering and selection are also discussed in the context of production of malate, valine and limonene.

Comments

This article is from Computational and Structural Biotechnology Journal 3 (2012): 10.5936/csbj.201210005.

Rights
© 2012 Jarboe et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly cited.
Copyright Owner
Jarboe et al.
Language
en
File Format
application/pdf
Citation Information
Laura R. Jarboe, Ping Liu, Kumar Babu Kautharapu and Lonnie O. Ingram. "Optimization of enzyme parameters for fermentative production of biorenewable fuels and chemicals" Computational and Structural Biotechnology Journal Vol. 3 Iss. 4 (2012) p. e201210005
Available at: http://works.bepress.com/laura_jarboe/20/