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RNA Search with Decision Trees and Partial Covariance Models, Electrical and Computer Engineering Faculty Publications and Presentations (2009)
The use of partial covariance models to search for RNA family members in genomic sequence...
Improved Covariance Model Parameter Estimation Using RNA Thermodynamic Properties (with Kay C. Wiese), Electrical and Computer Engineering Faculty Publications and Presentations (2007)
Covariance models are a powerful description of non-coding RNA (ncRNA) families that can be used...
RNA Gene Finding with Biased Mutation Operators, Electrical and Computer Engineering Faculty Publications and Presentations (2007)
The use of genetic algorithms for non-coding RNA gene finding has previously been investigated and...
Covariance Searches for ncRNA Gene Finding, Electrical and Computer Engineering Faculty Publications and Presentations (2006)
The use of covariance models for non-coding RNA gene finding is extremely powerful and also...
Accelerated Non-coding RNA Searches with Covariance Model Approximations, Electrical and Computer Engineering Faculty Publications and Presentations (2006)
Covariance models (CMs) are a very sensitive tool for finding non-coding RNA (ncRNA) genes in...
A Genetic Algorithms Approach to Non-coding RNA Gene Searches, Electrical and Computer Engineering Faculty Publications and Presentations (2006)
A genetic algorithm is proposed as an alternative to the traditional linear programming method for...
Truncated Profile Hidden Markov Models, Electrical and Computer Engineering Faculty Publications and Presentations (2005)
The profile hidden Markov model (HMM) is a powerful method for remote homolog database search....
Searching for Protein Classification Features, Electrical and Computer Engineering Faculty Publications and Presentations (2005)
A genetic algorithm is used to search for a set of classification features for a...
An Asynchronous GALS Interface with Applications, Electrical and Computer Engineering Faculty Publications and Presentations (2004)
A low-latency asynchronous interface for use in globally-asynchronous locally-synchronous (GALS) integrated circuits is presented. The...
Protein Family Classification Using Structural and Sequence Information, Electrical and Computer Engineering Faculty Publications and Presentations (2004)
Protein family classification usually relies on sequence information (as in the case of hidden Markov...