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Selected Works of George McNamara
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GPU Deconvolution Good result on 2048x2048x32 plane Z-series (update from dataset 56)
(2014)
  • George McNamara, M.D. Anderson Cancer Center
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Abstract

GPU Deconvolution Good result on 2048x2048x32 plane Z-series (update from dataset 56)

This web page and download is

http://works.bepress.com/gmcnamara/62

Marc Bruce sent me the file here (web page 62) that is a preliminary bug fix (apparently of NVidia CUDA FFT code!!!) from the original 'raw' Z-series that is part of the

http://works.bepress.com/gmcnamara/56

web page download. Please see that web page for details on the project (GADPH single molecule mRNA detection with Stellaris FISH probe sets).

Marc is:

MARC BRUCE, PHD

CTO and Co-Founder

MICROVOLUTION, LLC

http://www.microvolution.com/

//

The 730 Mb ZIP download includes 3 files:

* 32-bit TIFF series sent to me from Marc.

* 16-bit TIFF series I converted in ImageJ so I could open in MetaMorph 7.8.7.

* 8-bit AVI movie file of a "shallow tilt" 3D reconstruction I made with MetaMorph (using Z-spacing 4 times to add thickness to the cells). An intermediate step included a contrast adjustment to black out the background.

George

Keywords
  • CUDA,
  • GPU Deconvolution,
  • Bruce & Butte,
  • bug fix or workaround CUDA bug
Disciplines
Publication Date
Fall October 7, 2014
Comments
Data are facts. Facts and therefore data are not subject to copyright in the United States.
Citation Information
George McNamara. "GPU Deconvolution Good result on 2048x2048x32 plane Z-series (update from dataset 56)" (2014)
Available at: http://works.bepress.com/gmcnamara/62/