Journal articles

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Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing (with Peter C. Bundock, Frances G. Eliott, Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, and Robert J. Henry), Plant Biotechnology Journal (2009)

Discovering single nucleotide polymorphisms (SNPs) in specific genes in a heterozygous polyploid plant species, such...

 

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Genetic structuring in the spotted gum complex (genus Corymbia, section Politaria) (with Mervyn Shepherd, Shabana Kasem, Joel W. Ochieng, and Allison C. Crawford), Australian Systematic Botany (2008)

Spotted gums (genus Corymbia, section Politaria) occur as a species replacement series along the eastern...

 

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Sequence polymorphism discovery in wheat microsatellite flanking regions using pyrophosphate sequencing (with Helen Hill and Robert J. Henry), Molecular Breeding (2006)

Sequence polymorphisms such as insertion/deletions (indels) and single nucleotide polymorphisms (SNP) are suitable for automated...

 

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EST versus genomic derived microsatellites for genotyping wild and cultivated barley (with K Chabane, Giovanni M. Cordeiro, J Valkoun, and Robert J. Henry), Genetic Resources and Crop Evolution (2005)

Genetic variation present in wild and cultivated barley populations was investigated using two sources of...

 

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Application of SSR markers in the construction of Australian barley genetic maps (with Angelo Karakousis, Linda K. Banbury, Mehmet Cakir, Timothy A. Holton, Peter Langridge, and Robert J. Henry), Australian Journal of Agricultural Research (2003)

Simple sequence repeat (SSR) or microsatellite markers were examined for polymorphisms among the parents of...

 

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Identification of QTLs associated with variations in grain protein concentration in two-row barley (with L C. Emebiri, D B. Moody, J F. Panozzo, Kenneth J. Chalmers, and J M. Kretschmer), Australian Journal of Agricultural Research (2003)

Grain protein concentration (GPC) is arguably the most important factor when marketing malting barleys. Excessively...

 

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Mapping and QTL analysis of the barley population Tallon x Kaputar (with Mehmet Cakir, David ME Poulsen, N W. Galwey, Kenneth J. Chalmers, Greg J. Platz, R F. Park, R CM Lance, J F. Panozzo, B J. Read, D B. Moody, Andrew R. Barr, P Johnston, C D. Li, W JR Boyd, C R. Grime, R Appels, M GK Jones, and A Langridge), Australian Journal of Agricultural Research (2003)

A genetic map of barley with 224 AFLP and 39 simple sequence repeat (SSR) markers...

 

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Potential of SSR markers for plant breeding and variety identification in Australian barley germplasm (with Angelo Karakousis, Andrew R. Barr, Kenneth J. Chalmers, Timothy A. Holton, Robert J. Henry, Patrick Lim, and Peter Langridge), Australian Journal of Agricultural Research (2003)

SSR markers closely linked to 18 loci that control 16 important barley traits were assessed...

 

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Single nucleotide polymorphisms in cytochrome P450 genes from barley (with Peter C. Bundock, John T. Christopher, Peter Eggler, Robert J. Henry, and Timothy A. Holton), TAG Theoretical and Applied Genetics (2003)

Plant cytochrome P450s are known to be essential in a number of economically important pathways...

 

Book chapters

Sequence polymorphisms in the flanking regions of microsatellite markers (with Robert J. Henry), Plant genotyping II: SNP technology (2008)
 

Conference publications

Discovering SNPs for gene mapping in sugarcane using deep sequencing (with Peter C. Bundock, Frances G. Eliott, Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, and Robert J. Henry), Plant and Animal Genomes XVII Conference (2009)

As part of a marker program for QTL discovery, 313 sugarcane genes were targeted for...

 

Discovery of single nucleotide polymorphisms in sugarcane for gene mapping using 454 sequencing (with Peter C. Bundock, Frances G. Eliott, Adam D. Benson, Stirling Bowen, and Robert J. Henry), High-Throughput Genomic Technologies: the 9th Annual Meeting of the Australasian Microarray and Associated Technologies Association (AMATA) (2009)

Sugarcane is genetically complex due to polyploidy, aneuploidy and hybridisation which have led to a...

 

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Induced plant mutation and molecular analysis as a route to genetic improvement of specific grain quality traits (with L Slade Lee, Liz Izquierdo, Nicole F. Rice, and Robert J. Henry), Proceedings of the 13th Australasian Plant Breeding Conference: Breeding for success : diversity in action (2006)
 

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Using longSAGE to study cereal gene expression during grain development and germination (with Peter C. Bundock, Allison C. Crawford, Jessica F. White, Shane R. McIntosh, Giovanni M. Cordeiro, Toni Pacey-Miller, Lee Rooke, Linh Nguyen, Loraine Watson, and Robert J. Henry), Plant and Animal Genomes Conference XIV (2006)

Many methods of studying gene expression rely on previous knowledge of gene sequences to quantify...

 

Single nucleotide polymorphism analysis in support of plant breeding (with Robert J. Henry, Peter C. Bundock, Toni Pacey-Miller, Brett G. Kennedy, Daniel LE Waters, and Qingsheng Jin), 12th Australasian Plant Breeding Conference (2003)
 

SNP discovery and analysis in plant genomes (with Robert J. Henry, Toni Pacey-Miller, Brett G. Kennedy, Peter C. Bundock, Giovanni M. Cordeiro, Daniel LE Waters, and Mervyn Shepherd), Genomes: the Linkage to Life: XIX International Genetics Congress (2003)
 

SNP discovery in microsatellites and ESTs in hexaploid wheat using pryosequencing (with Frances M. Shapter, Stirling Bowen, and Robert J. Henry), 10th International Wheat Genetics Symposium (2003)
 

The international wheat SNP development project (with Robert J. Henry), Barley Technical / Cereal Chemistry Conference: Proceedings of the 11th Australian Barley Symposium and the 53rd Australian Cereal Chemistry Conference (2003)
 

Emerging molecular technology for rapid variety identification and detection of variety contamination (with Effie M. Ablett, Peter C. Bundock, Brett G. Kennedy, Nicole F. Rice, and Robert J. Henry), Cereals 2002: Proceedings of the 52nd Australian Cereal Chemistry Conference (2002)
 

EST versus genomic derived microsatellites for genotyping wild and cultivated barley (Presentation) (with Kamel Chabane, Giovanni M. Cordeiro, Jan Valkoun, and Robert J. Henry), EUCARPIA Cereal Section Meeting: From Biodiversity to Genomics: Breeding Strategies for Small Grain Cereals in the Third Millennium (2002)
 

Database for barley molecular markers (with Natalie Harker, Timothy A. Holton, Linda McClure, and Robert J. Henry), 51st Cereal Chemistry Conference (2001)
 

Routine analysis of the varietal identity and purity of barley using DNA based approaches (with Robert J. Henry, Effie M. Ablett, Timothy A. Holton, Michelle Ford, and Peter Portmann), Proceedings of the 10th Australian Barley Technical Symposium (2001)

DNA based varietal analysis has now moved from being a research tool to become a...

 

Mapping barley ESTs with SSRs and SNPs (with Timothy A. Holton, Linda McClure, and Robert J. Henry), Barley Genetics VIII: Proceedings of the 8th International Barley Genetics Symposium (2000)
 

SSR and SNP markers derived from barley ESTs (with Robert J. Henry, Timothy A. Holton, Raja Kota, Andy M. Muirhead, and Linda McClure), International Triticeae Mapping Initiative Public Workshop (2000)

DNA sequence information is providing a growing resource for the identification of genetic markers for...