Journal articles

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Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing (with Peter C. Bundock, Gary A. Ablett, Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, and Robert J. Henry), Plant Biotechnology Journal (2009)

Discovering single nucleotide polymorphisms (SNPs) in specific genes in a heterozygous polyploid plant species, such...

 

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An optimised ecotilling protocol for polyploids or pooled samples using a capillary electrophoresis system (with Giovanni M. Cordeiro and Robert J. Henry), Analytical Biochemistry (2006)
 

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Characterisation of single nucleotide polymorphisms in sugarcane EST’s (with Giovanni M. Cordeiro, C Lynne McIntyre, Rosanne E. Casu, and Robert J. Henry), Theoretical and Applied Genetics (2006)

Commercial sugarcane cultivars (Saccharum spp. hybrids) are both polyploid and aneuploid with chromosome numbers in...

 

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The identification and characterization of alleles of sucrose phosphate synthase gene family III in sugarcane (with C Lynne McIntyre, Mark Jackson, Giovanni M. Cordeiro, Ouzi Amouyal, Robert J. Henry, Rosanne E. Casu, S Hermann, and Karen S. Aitken), Molecular Breeding (2006)

Little is known about the extent of allelic diversity of genes in the complex polyploid,...

 

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Verification of interspecific pine hybrids using paternally inherited chloroplast microsatellites (with Mervyn J. Shepherd and Robert J. Henry), Forest Genetics (2006)

Pollen contamination continues to be a problem for many operational controlled-pollination programs for hybrid trees....

 

Book chapters

SNP discovery by ecotilling using capillary electrophoresis (with Giovanni M. Cordeiro, Peter C. Bundock, and Robert J. Henry), Plant genotyping II: SNP technology (2008)
 

Sugarcane (with Giovanni M. Cordeiro, Ouzi Amouyal, and Robert J. Henry), Pulses, Sugar and Tuber Crops (Genome Mapping and Molecular Breeding in Plants) (2007)
 

Conference publications

Comparative mapping of a sugarcane genetic map to the sorghum genome (with Karen S. Aitken, Meredith D. McNeil, Scott Hermann, Peter C. Bundock, Katarzyna Heller-Uszynska, Andrzej Kilian, Robert J. Henry, and Philip Jackson), 14th Australasian Plant Breeding Conference (APBC) held in conjunction with the 11th Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO) Congress (2009)
 

Discovering SNPs for gene mapping in sugarcane using deep sequencing (with Peter C. Bundock, Gary A. Ablett, Adam D. Benson, Rosanne E. Casu, Karen S. Aitken, and Robert J. Henry), Plant and Animal Genomes XVII Conference (2009)

As part of a marker program for QTL discovery, 313 sugarcane genes were targeted for...

 

Discovery of single nucleotide polymorphisms in sugarcane for gene mapping using 454 sequencing (with Peter C. Bundock, Gary A. Ablett, Adam D. Benson, Stirling Bowen, and Robert J. Henry), High-Throughput Genomic Technologies: the 9th Annual Meeting of the Australasian Microarray and Associated Technologies Association (AMATA) (2009)

Sugarcane is genetically complex due to polyploidy, aneuploidy and hybridisation which have led to a...

 

High through put discovery and analysis of genetic markers in sugarcane (with Peter C. Bundock, Stirling Bowen, and Robert J. Henry), 14th Australasian Plant Breeding Conference (APBC) held in conjunction with the 11th Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO) Congress (2009)
 

Using Mass Spectrometry (Sequenom MALDI-TOF) to genotype sugarcane (with Peter C. Bundock, Peter Eggler, Stirling Bowen, and Robert J. Henry), Australian Society of Sugar Cane Technologists (ASSCT) Conference, 29 April - 2 May (2008)

DNA markers of various kinds (AFLPs, SSRs, SNPs etc.) are being used for many crop...

 

Personalised plant genetic analysis (with Daniel LE Waters, Julie A. Pattemore, Peter C. Bundock, Nicole F. Rice, and Robert J. Henry), 58th Australian Cereal Chemistry Conference (2008)

Individual people respond to drugs differently in a genotype dependant manner. One of the key...

 

Genotyping of single nucleotide polymorphisms in sugarcane using mass spectrometry and CEL I polymorphism detection (with Peter C. Bundock, Giovanni M. Cordeiro, and Robert J. Henry), International Plant and Animal Genome Conference XV, International Consortium of Sugar Biotechnology Workshop, 13-17 January (2007)

Genetic linkage maps of sugarcane have to date been largely based on one or a...

 

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Methods for SNP identification and analysis in the sugarcane genome (with Giovanni M. Cordeiro, C Lynne McIntyre, and Robert J. Henry), Tropical Crop Biotechnology Conference (2006)

The sugarcane genome poses the challenge of being highly polyploid and requiring ingenuity to overcome...

 

SCAMinG an efficient high through put approach to discovery and analysis of SNP for genotyping of agricultural and food species (with Giovanni M. Cordeiro, Nicole F. Rice, Daniel LE Waters, Stirling Bowen, Stephen D. Williams, and Robert J. Henry), Unlocking the Potential of Agricultural Biotechnology, Agricultural Biotechnology International Conference (2006)
 

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SCAMing: an efficient high throughput approach to discovery and analysis of Snps for genotyping of tropical crop species (with Giovanni M. Cordeiro, Nicole F. Rice, James K. Cronin, Daniel LE Waters, Peter C. Bundock, Stirling Bowen, and Robert J. Henry), Tropical Crop Biotechnology Conference (2006)

Model organisms have well established genetic marker tools. However, genotyping of the wide range of...

 

SNP analysis tools for functional analysis of sugarcane genes (with Giovanni M. Cordeiro, Brett G. Kennedy, and Robert J. Henry), Plant and Animal Genomes Conference XIV (2006)

Single nucleotide polymorphism (SNP) analysis in polyploid genomes such as sugarcane requires the application of...

 

A visual SNiPpet of the sugarcane genome (with Giovanni M. Cordeiro, C Lynne McIntyre, and Robert J. Henry), CRC for Sugar Industry Innovation through Biotechnology Symposium (2005)
 

Development and use of SNP markers to verify gene haplotypes in sugarcane (with Ouzi Amouyal, Mark Jackson, Giovanni M. Cordeiro, Rosanne E. Casu, C Lynne McIntyre, and Robert J. Henry), Plant and Animals Genomes Conference XIII (2005)

Sugarcane cultivars are polyploid, aneuploid, interspecific hybrids between the domesticated species S. officinarum, and a...

 

Development of SNP markers for mapping and allelotyping in sugarcane (with Giovanni M. Cordeiro, Ouzi Amouyal, C Lynne McIntyre, and Robert J. Henry), Plant & Animal Genomes XIII Conference (2005)

The highly complex and polyploid genome of sugarcane provides challenges to nearly all technologies developed...