We describe a new species of Anolis from a high-elevation locality in the Department of Cusco, Peru. This species is similar to Anolis boettgeri but differs in characters of scalation and coloration. We reanalyze Anolis albimaculatus and find this species to be a synonym of A. boettgeri. We describe variation in A. boettgeri based on topotypical material, including the first described males of the species. Phylogenetic analysis of the new form places it within the Dactyloallatifrons clade of South American “Alpha" Anolis.