Articles
Protein sequence entropy is closely related to packing density and hydrophobicity (with H Liao, W Yeh, D Chiang, and R L. Jernigan), Protein Engineering Design and Selection (2005)
We investigated the correlation between the Shannon information entropy, ‘sequence entropy’, with respect to the...
Flexibility of BIV TAR-Tat: Models of peptide binding (with M Hsieh, E D. Collins, and T Blomquist), Journal of Biomolecular Structure and Dynamics (2002)
Biological applications of hammerhead ribozymes as anti-viral molecules (with K.-T. Jeang), Current Medicinal Chemistry (2001)
Ribozymes are catalytic RNAs that can cleave substrate RNAs in a sequence specific manner. Here...
RNA bulge entropies correlate with peptide binding strengths for HIV-1 and BIV TAR RNA because of improved conformational access (with I Baharand and R L. Jernigan), Nucleic Acids Research (1998)
For the binding of peptides to wild-type HIV-1 and BIV TAR RNA and to mutants...
RNA base-amino acid interaction strengths derived from structures and sequences (with S Arora and R L. Jernigan), Nucleic Acids Research (1997)
We investigate RNA base-amino acid interactions by counting their contacts in structures and their implicit...